PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g05460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 415aa    MW: 45435.2 Da    PI: 4.9586
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g05460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.53.4e-13172222155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Vradi02g05460.1 172 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 222
                      89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.11376137IPR001471AP2/ERF domain
SMARTSM003804.0E-1292143IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-9101138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-11102138IPR001471AP2/ERF domain
PfamPF008471.0E-8172222IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-17172231IPR016177DNA-binding domain
CDDcd000182.09E-26172232No hitNo description
PROSITE profilePS5103215.527173230IPR001471AP2/ERF domain
SMARTSM003802.5E-32173236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-16173230IPR001471AP2/ERF domain
PRINTSPR003673.9E-6174185IPR001471AP2/ERF domain
PRINTSPR003673.9E-6212232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MLDLNLNAEW TDSARDGDSP VPLEEFPEGS RNQMAESGTS NSSVVNADGS SNGCCDEDSC  60
STRADDVYTF NFDILKVEGA NDVVTKELFP VSGGVATSSD CGKQVYLGGF DTAHAAARAY  120
DRAAIKFRGV DADINFNLSD YEDDLRQMKN LSKEEFVHIL RRQSTGFSRG SSKYRGVTLH  180
KCGRWEARMG QFLGKKYIYL GLFDSEVEAA RAYDKAAIKC NGREAVTNFE PSTYEGEMKS  240
AAINEVSNHN LDLNLGIATP GTGLKENWQQ LQFPSVHYNT HGGISSMMET NVDSGVGNPS  300
FKRLVVNEDC PSVWNGMCPS FFPNEEKTER MNTEHSKGLP NWAWQTHAQV NATPVPTFSA  360
AAASSGFSIS ATFPPTATFP TRSMNSNPQS LCFTSSTMHS SEYYYQVKPR QAPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310860.0KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494425.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK035e-81RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A0L9V6P80.0A0A0L9V6P8_PHAAN; Uncharacterized protein
STRINGGLYMA12G07800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-93related to AP2.7